Uses new data to determine if an animal that was previously flagged as a mortality made a station/location change and may therefore be alive.
review(
morts,
new.data,
old.data = NULL,
type,
ID,
station,
res.start = "auto",
res.end = NULL,
residences = NULL,
units = NULL,
ddd = NULL,
from.station = NULL,
to.station = NULL,
verbose = TRUE
)a dataframe with previously flagged mortalities. Format does
not need to match new.data exactly, but the names and formats of ID, station,
and res.start fields must match in all input dataframes.
a dataframe of new residence events (i.e., generated from
detection data that were not included in earlier mort analyses).
optional dataframe of residence events that were used
in earlier mort analyses. If drift was applied in earlier analyses,
including old.data is recommended to avoid falsely identifying station
changes.
the method used to generate the residence events. Options are
"mort", "actel", "glatos", "vtrack", or "manual". If "manual", then user
must specify ID, station, res.start, res.end, residences, and units.
a string of the name of the column in morts and new.data that
holds the tag or sample IDs.
a string of the name of the column in morts and new.data
that holds the station name or receiver location.
a string of the name of the column in morts and new.data
that holds the start date and time. Must be specified and in POSIXt or
character in the format YYYY-mm-dd HH:MM:SS.
an optional string of the name of the column in morts and new data
that holds the end date and time. Only needed if drift is applied.
an optional character string with the name of the column
in morts and new.data that holds the duration of the residence events.
Only needed if drift is applied.
optional units of the duration of the residence events in
morts and new.data. Only needed if drift is applied.
a dataframe of stations/locations where detected movement between stations may be due to drifting of an expelled tag or dead animal.
a string of the name of the column in ddd that contains
the station/location names where drifting detections may start from. Must
be identical to the station/location names in morts and new.data.
a string of the name of the column in ddd that contains
the station/location names where drifting detections may move to. Must
be identical to the station/location names in morts and new.data.
option to display progress bar as function and called functions are run. Default is TRUE.
A dataframe with one row for each tag ID from morts
with a station/location change that was identified
in new.data. The remaining fields will include the information for the
residence event that was identified as the station change, so the station
change can be verified by the user before removing the animal from morts.
All input data fields (e.g., any name, location, or species information
that was included with the input data) will be retained.
morts<-morts(data=events,type="mort",ID="ID",station="Station.Name",
method="any",verbose=FALSE)
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undead<-review(morts=morts,new.data=new.data,
type="mort",ID="ID",station="Station.Name",verbose=FALSE)